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Report for Sequence Feature Glyma18g08671

Feature Type:gene_model
Chromosome:Gm18
Start:7397791
stop:7399461
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g08671
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G53350AT Annotation by Michelle Graham. TAIR10: Disease resistance protein (CC-NBS-LRR class) family | chr1:19903899-19907515 FORWARD LENGTH=927 SoyBaseE_val: 1.00E-13ISS
GO:0006952GO-bp Annotation by Michelle Graham. GO Biological Process: defense response SoyBaseN/AISS
GO:0043531GO-mf Annotation by Michelle Graham. GO Molecular Function: ADP binding SoyBaseN/AISS
PTHR23155Panther LEUCINE-RICH REPEAT-CONTAINING PROTEIN JGI ISS
PTHR23155:SF121Panther SUBFAMILY NOT NAMED JGI ISS
UniRef100_G7J1G6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cc-nbs resistance protein n=1 Tax=Medicago truncatula RepID=G7J1G6_MEDTR SoyBaseE_val: 1.00E-26ISS
UniRef100_I1KYI9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KYI9_SOYBN SoyBaseE_val: 2.00E-75ISS

Expression Patterns of Glyma18g08671
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g08671 not represented in the dataset
Glyma18g08671 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g08671 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g077900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g08671
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g08671
>Glyma18g08671.1   sequence type=CDS   gene model=Glyma18g08671   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAAACTGCAGTGGCCTTTCTACTTGACCATTTGGTTAAGTTACTGAGTGAGGAAGCAACAATCTTAGGAAAGGTGCACAAGGAGGTTGAGGAGATCAAGAATCAGCTAGAACGAATAAACTCTTACATTAGGGATGCAGAAAAGAAGCAGTTGTCAGATGATCAATCAAGTGTCAAAAGTTGGTTGAAATCATTGAGGAACGTGGCGTTTGAGATGGAGGATGTGATTGATCACTATTTGCTCAAAGTGGAAGAACGTGGTCAGAGGCATGGTATCCATGGTGCAGCCACTGAATTAATAGAGAAGGTCAAAACTGTAACACATCGTCATGATATTGCATCTGATATTAAAAAAGTCAGAAAAACCCTAGACGGTCTCTACAGTGAAGGAATGGTCTTGAAACTCGAGCCATCTTCTCGTGCTCCTTATCGTGCAACTCCAAGGTTAGGCGCTCATTTTGTCAAGGAACCTCAACTTGTTGGTATTGATCGTCACAAGCAGCAACTCACAAATTGGCTAACAGAAAGGGGAGTTCCAATCAGGGTGGTGGTTGGCCCACCAGGGATAGGTAATTTATATATATTAATTTTCTTGCAGTTTCTGTTCCCAATAAATTATTAA
Predicted protein sequences of Glyma18g08671
>Glyma18g08671.1   sequence type=predicted peptide   gene model=Glyma18g08671   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAETAVAFLLDHLVKLLSEEATILGKVHKEVEEIKNQLERINSYIRDAEKKQLSDDQSSVKSWLKSLRNVAFEMEDVIDHYLLKVEERGQRHGIHGAATELIEKVKTVTHRHDIASDIKKVRKTLDGLYSEGMVLKLEPSSRAPYRATPRLGAHFVKEPQLVGIDRHKQQLTNWLTERGVPIRVVVGPPGIGNLYILIFLQFLFPINY*






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